HL_3PIP_047

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GUAAAGAUGC

Length

10 nucleotides

Bulged bases

3PIP|1|X|A|2013, 3PIP|1|X|A|2014, 3PIP|1|X|G|2015

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3PIP_047 not in the Motif Atlas

Homologous match to HL_7A0S_049

Geometric discrepancy: 0.2487

The information below is about HL_7A0S_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

3PIP|1|X|G|2010
3PIP|1|X|U|2011
3PIP|1|X|A|2012
3PIP|1|X|A|2013
3PIP|1|X|A|2014
3PIP|1|X|G|2015
3PIP|1|X|A|2016
3PIP|1|X|U|2017
3PIP|1|X|G|2018
3PIP|1|X|C|2019

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain Z

50S ribosomal protein L32