HL_3PIP_050

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

3PIP|1|X|G|2229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3PIP_050 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.1336

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIP|1|X|C|2227
3PIP|1|X|U|2228
3PIP|1|X|G|2229
3PIP|1|X|G|2230
3PIP|1|X|G|2231
3PIP|1|X|G|2232
3PIP|1|X|C|2233
3PIP|1|X|G|2234
3PIP|1|X|G|2235

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain J

50S ribosomal protein L16

Chain T

50S ribosomal protein L27