HL_3PIP_072

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CACCUUAUGCGUG

Length

13 nucleotides

Bulged bases

3PIP|1|X|U|554, 3PIP|1|X|U|555, 3PIP|1|X|A|556, 3PIP|1|X|G|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIP|1|X|C|550
3PIP|1|X|A|551
3PIP|1|X|C|552
3PIP|1|X|C|553
3PIP|1|X|U|554
3PIP|1|X|U|555
3PIP|1|X|A|556
3PIP|1|X|U|557
3PIP|1|X|G|558
3PIP|1|X|C|559
3PIP|1|X|G|560
3PIP|1|X|U|561
3PIP|1|X|G|562

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain O

50S ribosomal protein L21