HL_3PIP_077
3D structure
- PDB id
- 3PIP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- CACGAACAGUG
- Length
- 11 nucleotides
- Bulged bases
- 3PIP|1|X|A|1799, 3PIP|1|X|C|1801
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3PIP_077 not in the Motif Atlas
- Geometric match to HL_8KAL_008
- Geometric discrepancy: 0.3396
- The information below is about HL_8KAL_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
3PIP|1|X|C|1795
3PIP|1|X|A|1796
3PIP|1|X|C|1797
3PIP|1|X|G|1798
3PIP|1|X|A|1799
3PIP|1|X|A|1800
3PIP|1|X|C|1801
3PIP|1|X|A|1802
3PIP|1|X|G|1803
3PIP|1|X|U|1804
3PIP|1|X|G|1805
Current chains
- Chain X
- RIBOSOMAL 23S RNA
Nearby chains
- Chain A
- 50S ribosomal protein L2
- Chain U
- 50S ribosomal protein L28
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