HL_3PIP_083

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GUUCGUGAAAC

Length

11 nucleotides

Bulged bases

3PIP|1|X|G|399, 3PIP|1|X|A|402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3PIP_083 not in the Motif Atlas

Homologous match to HL_7A0S_013

Geometric discrepancy: 0.2074

The information below is about HL_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.8

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

3PIP|1|X|G|395
3PIP|1|X|U|396
3PIP|1|X|U|397
3PIP|1|X|C|398
3PIP|1|X|G|399
3PIP|1|X|U|400
3PIP|1|X|G|401
3PIP|1|X|A|402
3PIP|1|X|A|403
3PIP|1|X|A|404
3PIP|1|X|C|405

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain U

50S ribosomal protein L28