HL_3SD3_001

3D structure

PDB id

3SD3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the tetrahydrofolate riboswitch containing a U25C mutation

Experimental method

X-RAY DIFFRACTION

Resolution

1.95 Å

Loop

Sequence

AAUGGGAUGUCGU

Length

13 nucleotides

Bulged bases

3SD3|1|A|G|36, 3SD3|1|A|C|43

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27819.1

Basepair signature

cWW-cWW-tWH-R-R-R-R-R

Number of instances in this motif group

1

Unit IDs

3SD3|1|A|A|33
3SD3|1|A|A|34
3SD3|1|A|U|35
3SD3|1|A|G|36
3SD3|1|A|G|37
3SD3|1|A|G|38
3SD3|1|A|A|39
3SD3|1|A|U|40
3SD3|1|A|G|41
3SD3|1|A|U|42
3SD3|1|A|C|43
3SD3|1|A|G|44
3SD3|1|A|U|45

Current chains

Chain A

Tetrahydrofolate riboswitch

Nearby chains