HL_3SUY_003

3D structure

PDB id

3SUY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of THF riboswitch, unbound status

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

ACGGGGAGUU

Length

10 nucleotides

Bulged bases

3SUY|1|X|G|40||||17_555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3SUY_003 not in the Motif Atlas

Geometric match to HL_3SUX_001

Geometric discrepancy: 0.1002

The information below is about HL_3SUX_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_14856.1

Basepair signature

cWW-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

3SUY|1|X|A|38||||17_555
3SUY|1|X|C|39||||17_555
3SUY|1|X|G|40||||17_555
3SUY|1|X|G|41||||17_555
3SUY|1|X|G|42||||17_555
3SUY|1|X|G|43||||17_555
3SUY|1|X|A|44||||17_555
3SUY|1|X|G|45||||17_555
3SUY|1|X|U|46||||17_555
3SUY|1|X|U|47||||17_555

Current chains

Chain X

riboswitch

Nearby chains