HL_3T1H_008

3D structure

PDB id

3T1H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA lysine 3 (tRNALys3) bound to an mRNA with an AAA-codon in the A-site and Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3T1H_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0715

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

3T1H|1|A|C|315
3T1H|1|A|A|316
3T1H|1|A|C|317
3T1H|1|A|U|318
3T1H|1|A|G|319
3T1H|1|A|A|320
3T1H|1|A|G|321
3T1H|1|A|A|322
3T1H|1|A|C|323
3T1H|1|A|A|324
3T1H|1|A|C|325
3T1H|1|A|G|326
3T1H|1|A|G|327
3T1H|1|A|G|328

Current chains

Chain A

16s rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20