HL_3TRZ_003

3D structure

PDB id

3TRZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Lin28A in complex with let-7d microRNA pre-element

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGGGAUUUU

Length

9 nucleotides

Bulged bases

3TRZ|1|W|G|6, 3TRZ|1|W|G|7, 3TRZ|1|W|G|8, 3TRZ|1|W|A|9, 3TRZ|1|W|U|10

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3TRZ_003 not in the Motif Atlas

Geometric match to HL_3TRZ_001

Geometric discrepancy: 0.0402

The information below is about HL_3TRZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_65266.1

Basepair signature

cWW-F-F

Number of instances in this motif group

1

Unit IDs

3TRZ|1|W|A|5
3TRZ|1|W|G|6
3TRZ|1|W|G|7
3TRZ|1|W|G|8
3TRZ|1|W|A|9
3TRZ|1|W|U|10
3TRZ|1|W|U|11
3TRZ|1|W|U|12
3TRZ|1|W|U|13

Current chains

Chain W

RNA (5'-R(*GP*GP*GP*CP*AP*GP*GP*GP*AP*UP*UP*UP*UP*GP*CP*CP*CP*GP*GP*AP*G)-3')

Nearby chains

Chain C

Protein lin-28 homolog A

Chain F

Protein lin-28 homolog A