HL_3U5F_010

3D structure

PDB id

3U5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 40S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

3U5F|1|6|G|403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_94364.2

Basepair signature

cWW-tWH-R-tWH-R-R-R

Number of instances in this motif group

5

Unit IDs

3U5F|1|6|C|393
3U5F|1|6|C|394
3U5F|1|6|U|395
3U5F|1|6|G|396
3U5F|1|6|A|397
3U5F|1|6|G|398
3U5F|1|6|A|399
3U5F|1|6|A|400
3U5F|1|6|A|401
3U5F|1|6|C|402
3U5F|1|6|G|403
3U5F|1|6|G|404

Current chains

Chain 6

18S rRNA

Nearby chains