HL_3U5F_021

3D structure

PDB id

3U5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 40S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46175.6

Basepair signature

cWW-R-tSH-R-R-R-R

Number of instances in this motif group

17

Unit IDs

3U5F|1|6|A|900
3U5F|1|6|G|901
3U5F|1|6|G|902
3U5F|1|6|U|903
3U5F|1|6|G|904
3U5F|1|6|A|905
3U5F|1|6|A|906
3U5F|1|6|A|907
3U5F|1|6|U|908
3U5F|1|6|U|909

Current chains

Chain 6

18S rRNA

Nearby chains