HL_3U5F_034

3D structure

PDB id

3U5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 40S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUUGUAAUUAUU

Length

12 nucleotides

Bulged bases

3U5F|1|6|U|1557, 3U5F|1|6|U|1558, 3U5F|1|6|A|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89131.2

Basepair signature

cWW-cWH-R-R-tWH-R-R-R

Number of instances in this motif group

4

Unit IDs

3U5F|1|6|A|1550
3U5F|1|6|U|1551
3U5F|1|6|U|1552
3U5F|1|6|G|1553
3U5F|1|6|U|1554
3U5F|1|6|A|1555
3U5F|1|6|A|1556
3U5F|1|6|U|1557
3U5F|1|6|U|1558
3U5F|1|6|A|1559
3U5F|1|6|U|1560
3U5F|1|6|U|1561

Current chains

Chain 6

18S rRNA

Nearby chains