HL_3UCU_002

3D structure

PDB id

3UCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

The c-di-GMP-I riboswitch bound to pGpG

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAUUGCACUCCG

Length

12 nucleotides

Bulged bases

3UCU|1|R|C|664

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3UCU_002 not in the Motif Atlas

Geometric match to HL_8G9Z_001

Geometric discrepancy: 0.1079

The information below is about HL_8G9Z_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.10

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

3UCU|1|R|C|65
3UCU|1|R|A|660
3UCU|1|R|U|661
3UCU|1|R|U|662
3UCU|1|R|G|663
3UCU|1|R|C|664
3UCU|1|R|A|665
3UCU|1|R|C|666
3UCU|1|R|U|667
3UCU|1|R|C|668
3UCU|1|R|C|669
3UCU|1|R|G|75

Current chains

Chain R

RNA (92-MER)

Nearby chains

Chain P

U1 small nuclear ribonucleoprotein A