HL_3V11_003
3D structure
- PDB id
- 3V11 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the ternary initiation complex AIF2:GDPNP:methionylated initiator TRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 5 Å
Loop
- Sequence
- GG(5MU)(PSU)CAAAUCC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3V11_003 not in the Motif Atlas
- Homologous match to HL_4WQ1_225
- Geometric discrepancy: 0.3104
- The information below is about HL_4WQ1_225
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3V11|1|D|G|52
3V11|1|D|G|53
3V11|1|D|5MU|54
3V11|1|D|PSU|55
3V11|1|D|C|56
3V11|1|D|A|57
3V11|1|D|A|58
3V11|1|D|A|59
3V11|1|D|U|60
3V11|1|D|C|61
3V11|1|D|C|62
Current chains
- Chain D
- Initiator tRNA
Nearby chains
- Chain B
- Translation initiation factor 2 subunit alpha
Coloring options: