HL_3V2F_048

3D structure

PDB id

3V2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of YfiA bound to the 70S ribosome. This PDB entry contains coordinates for the 50S subunit of the 2nd ribosome in the ASU

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

3V2F|1|A|A|2030, 3V2F|1|A|A|2031, 3V2F|1|A|G|2032

QA status

QA data not found

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_18156.2

Basepair signature

cWW-R-R-tWH-R

Number of instances in this motif group

6

Unit IDs

3V2F|1|A|G|2027
3V2F|1|A|U|2028
3V2F|1|A|G|2029
3V2F|1|A|A|2030
3V2F|1|A|A|2031
3V2F|1|A|G|2032
3V2F|1|A|A|2033
3V2F|1|A|U|2034
3V2F|1|A|G|2035
3V2F|1|A|C|2036

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 5

50S Ribosomal Protein L32

Chain E

50S Ribosomal Protein L3

Chain V

50S Ribosomal Protein L21