HL_3V2F_052

3D structure

PDB id

3V2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of YfiA bound to the 70S ribosome. This PDB entry contains coordinates for the 50S subunit of the 2nd ribosome in the ASU

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

3V2F|1|A|A|2268, 3V2F|1|A|C|2275

QA status

QA data not found

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41833.2

Basepair signature

cWW-tSH-tHH-tWW-R-R-R

Number of instances in this motif group

6

Unit IDs

3V2F|1|A|C|2264
3V2F|1|A|U|2265
3V2F|1|A|A|2266
3V2F|1|A|A|2267
3V2F|1|A|A|2268
3V2F|1|A|A|2269
3V2F|1|A|G|2270
3V2F|1|A|G|2271
3V2F|1|A|U|2272
3V2F|1|A|A|2273
3V2F|1|A|A|2274
3V2F|1|A|C|2275
3V2F|1|A|G|2276

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 0

50S Ribosomal Protein L27

Chain Q

50S Ribosomal Protein L16

Chain Z

50S Ribosomal Protein L25