HL_3VJR_001

3D structure

PDB id

3VJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Peptidyl-tRNA hydrolase from Escherichia coli in complex with the CCA-acceptor-T[PSI]C domain of tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GUUCGAUCC

Length

9 nucleotides

Bulged bases

3VJR|1|B|U|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop with 2 bulged bases not stacked

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

3VJR|1|B|G|13
3VJR|1|B|U|14
3VJR|1|B|U|15
3VJR|1|B|C|16
3VJR|1|B|G|17
3VJR|1|B|A|18
3VJR|1|B|U|19
3VJR|1|B|C|20
3VJR|1|B|C|21

Current chains

Chain B

tRNA CCA-acceptor

Nearby chains

Chain A

Peptidyl-tRNA hydrolase