HL_3VRS_001

3D structure

PDB id

3VRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of fluoride riboswitch, soaked in Mn2+

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAUGAGGCCC

Length

10 nucleotides

Bulged bases

3VRS|1|A|A|6, 3VRS|1|A|U|7

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3VRS_001 not in the Motif Atlas

Homologous match to HL_4ENC_001

Geometric discrepancy: 0.1536

The information below is about HL_4ENC_001

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_00911.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

3VRS|1|A|G|5
3VRS|1|A|A|6
3VRS|1|A|U|7
3VRS|1|A|G|8
3VRS|1|A|A|9
3VRS|1|A|G|10
3VRS|1|A|G|11
3VRS|1|A|C|12
3VRS|1|A|C|13
3VRS|1|A|C|14

Current chains

Chain A

Fluoride riboswitch

Nearby chains