HL_3ZD3_002

3D structure

PDB id

3ZD3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution full-length hammerhead ribozyme in the presence of Mg ion.

Experimental method

X-RAY DIFFRACTION

Resolution

1.55 Å

Loop

Sequence

CCAAAUAG

Length

8 nucleotides

Bulged bases

3ZD3|1|A|A|28, 3ZD3|1|A|A|29

QA status

QA data not found

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_18011.1

Basepair signature

cWW-R-R-R-R

Number of instances in this motif group

1

Unit IDs

3ZD3|1|A|C|25
3ZD3|1|A|C|26
3ZD3|1|A|A|27
3ZD3|1|A|A|28
3ZD3|1|A|A|29
3ZD3|1|A|U|30
3ZD3|1|A|A|31
3ZD3|1|A|G|32

Current chains

Chain A

HAMMERHEAD RIBOZYME, ENZYME STRAND

Nearby chains

Chain B

HAMMERHEAD RIBOZYME, SUBTRATE STRAND