HL_3ZD4_001

3D structure

PDB id

3ZD4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Full-Length Hammerhead Ribozyme with G12A substitution at the general base position

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

CUGAUG

Length

6 nucleotides

Bulged bases

3ZD4|1|A|U|16

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3ZD4_001 not in the Motif Atlas

Geometric match to HL_4V9F_041

Geometric discrepancy: 0.1024

The information below is about HL_4V9F_041

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.4

Basepair signature

cWW-F

Number of instances in this motif group

48

Unit IDs

3ZD4|1|A|C|15
3ZD4|1|A|U|16
3ZD4|1|A|G|17
3ZD4|1|A|A|18
3ZD4|1|A|U|19
3ZD4|1|A|G|20

Current chains

Chain A

HAMMERHEAD RIBOZYME, ENZYME STRAND

Nearby chains

Chain B

HAMMERHEAD RIBOZYME, SUBSTRATE STRAND