HL_3ZGZ_004

3D structure

PDB id

3ZGZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and toxic moiety from agrocin 84 (TM84) in aminoacylation-like conformation

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGAAUCGGUAGAC

Length

13 nucleotides

Bulged bases

3ZGZ|1|E|U|16, 3ZGZ|1|E|C|17, 3ZGZ|1|E|G|18, 3ZGZ|1|E|G|19, 3ZGZ|1|E|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3ZGZ_004 not in the Motif Atlas

Homologous match to HL_3ZGZ_001

Geometric discrepancy: 0.0597

The information below is about HL_3ZGZ_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_68767.1

Basepair signature

cWW-cWS-tSH-cWS-F

Number of instances in this motif group

3

Unit IDs

3ZGZ|1|E|G|12
3ZGZ|1|E|G|13
3ZGZ|1|E|A|14
3ZGZ|1|E|A|15
3ZGZ|1|E|U|16
3ZGZ|1|E|C|17
3ZGZ|1|E|G|18
3ZGZ|1|E|G|19
3ZGZ|1|E|U|20
3ZGZ|1|E|A|20|||A
3ZGZ|1|E|G|21
3ZGZ|1|E|A|22
3ZGZ|1|E|C|23

Current chains

Chain E

TRNA-LEU UAA ISOACCEPTOR

Nearby chains

Chain D

LEUCINE--TRNA LIGASE