HL_488D_004

3D structure

PDB id

488D (explore in PDB, NAKB, or RNA 3D Hub)

Description

CATALYTIC RNA ENZYME-PRODUCT COMPLEX

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUCUG

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_488D_004 not in the Motif Atlas

Geometric match to HL_4V9K_033

Geometric discrepancy: 0.3247

The information below is about HL_4V9K_033

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

488D|1|D|C|152
488D|1|D|U|153
488D|1|D|C|154
488D|1|D|U|161
488D|1|D|G|162

Current chains

Chain D

UNCLEAVED RNA SUBSTRATE

Nearby chains

Chain A

RNA RIBOZYME STRAND

Chain B

FIRST RNA FRAGMENT OF CLEAVED SUBSTRATE

Chain C

SECOND RNA FRAGMENT OF CLEAVED SUBSTRATE