3D structure

PDB id
488D (explore in PDB, NAKB, or RNA 3D Hub)
Description
CATALYTIC RNA ENZYME-PRODUCT COMPLEX
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CUCUG
Length
5 nucleotides
Bulged bases
None detected
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_488D_004 not in the Motif Atlas
Geometric match to HL_4V9K_033
Geometric discrepancy: 0.3247
The information below is about HL_4V9K_033
Detailed Annotation
tRNA D-loop
Broad Annotation
No text annotation
Motif group
HL_48417.6
Basepair signature
cWW-F-F
Number of instances in this motif group
22

Unit IDs

488D|1|D|C|152
488D|1|D|U|153
488D|1|D|C|154
488D|1|D|U|161
488D|1|D|G|162

Current chains

Chain D
UNCLEAVED RNA SUBSTRATE

Nearby chains

Chain A
RNA RIBOZYME STRAND
Chain B
FIRST RNA FRAGMENT OF CLEAVED SUBSTRATE
Chain C
SECOND RNA FRAGMENT OF CLEAVED SUBSTRATE

Coloring options:


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