HL_4AQY_034

3D structure

PDB id

4AQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome-apramycin complexes

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGCGCAAGCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4AQY_034 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.2862

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4AQY|1|A|G|377
4AQY|1|A|G|378
4AQY|1|A|C|379
4AQY|1|A|G|380
4AQY|1|A|C|381
4AQY|1|A|A|382
4AQY|1|A|A|383
4AQY|1|A|G|384
4AQY|1|A|C|385
4AQY|1|A|C|386

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16