HL_4B5R_005

3D structure

PDB id

4B5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

SAM-I riboswitch bearing the H. marismortui K-t-7

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4B5R_005 not in the Motif Atlas

Geometric match to HL_4V9F_023

Geometric discrepancy: 0.1012

The information below is about HL_4V9F_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4B5R|1|A|A|49||||7_555
4B5R|1|A|G|50||||7_555
4B5R|1|A|A|51||||7_555
4B5R|1|A|A|52||||7_555
4B5R|1|A|A|53||||7_555
4B5R|1|A|U|54||||7_555

Current chains

Chain A

SAM-I RIBOSWITCH

Nearby chains