HL_4BPP_010

3D structure

PDB id

4BPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the eukaryotic 40S ribosomal subunit in complex with eIF1 and eIF1A - Complex 4

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

4BPP|1|A|C|393, 4BPP|1|A|G|394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_94364.2

Basepair signature

cWW-tWH-R-tWH-R-R-R

Number of instances in this motif group

5

Unit IDs

4BPP|1|A|C|384
4BPP|1|A|C|385
4BPP|1|A|U|386
4BPP|1|A|G|387
4BPP|1|A|A|388
4BPP|1|A|G|389
4BPP|1|A|A|390
4BPP|1|A|A|391
4BPP|1|A|A|392
4BPP|1|A|C|393
4BPP|1|A|G|394
4BPP|1|A|G|395

Current chains

Chain A

18S RRNA

Nearby chains

Chain 2

40S RIBOSOMAL PROTEIN S8

Chain P

40S RIBOSOMAL PROTEIN S24

Chain W

40S RIBOSOMAL PROTEIN RPS4E

Chain Y

40S RIBOSOMAL PROTEIN S6