HL_4BPP_033

3D structure

PDB id

4BPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the eukaryotic 40S ribosomal subunit in complex with eIF1 and eIF1A - Complex 4

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UUUGGAAUUGUG

Length

12 nucleotides

Bulged bases

4BPP|1|A|G|1531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89131.2

Basepair signature

cWW-cWH-R-R-tWH-R-R-R

Number of instances in this motif group

4

Unit IDs

4BPP|1|A|U|1522
4BPP|1|A|U|1523
4BPP|1|A|U|1524
4BPP|1|A|G|1525
4BPP|1|A|G|1526
4BPP|1|A|A|1527
4BPP|1|A|A|1528
4BPP|1|A|U|1529
4BPP|1|A|U|1530
4BPP|1|A|G|1531
4BPP|1|A|U|1532
4BPP|1|A|G|1533

Current chains

Chain A

18S RRNA

Nearby chains

Chain M

40S RIBOSOMAL PROTEIN RPS18E

Chain N

40S RIBOSOMAL PROTEIN RPS29E

Chain S

40S RIBOSOMAL PROTEIN RPS15E

Chain T

40S RIBOSOMAL PROTEIN RPS19E