HL_4BTS_107

3D structure

PDB id

4BTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GUCAUCAGC

Length

9 nucleotides

Bulged bases

4BTS|1|CA|G|1573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4BTS_107 not in the Motif Atlas

Homologous match to HL_4V88_220

Geometric discrepancy: 0.2002

The information below is about HL_4V88_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4BTS|1|CA|G|1566
4BTS|1|CA|U|1567
4BTS|1|CA|C|1568
4BTS|1|CA|A|1569
4BTS|1|CA|U|1570
4BTS|1|CA|C|1571
4BTS|1|CA|A|1572
4BTS|1|CA|G|1573
4BTS|1|CA|C|1574

Current chains

Chain CA

18S ribosomal RNA

Nearby chains

Chain CJ

40S RIBOSOMAL PROTEIN RPS20E

Chain CN

40S RIBOSOMAL PROTEIN RPS29E

Chain CT

40S RIBOSOMAL PROTEIN RPS19E