HL_4D5N_001

3D structure

PDB id

4D5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

AAUACAAUUUUGAGAGGUUAAUAAAU

Length

26 nucleotides

Bulged bases

4D5N|1|X|U|6068

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D5N|1|X|A|6051
4D5N|1|X|A|6052
4D5N|1|X|U|6053
4D5N|1|X|A|6054
4D5N|1|X|C|6055
4D5N|1|X|A|6056
4D5N|1|X|A|6057
4D5N|1|X|U|6058
4D5N|1|X|U|6059
4D5N|1|X|U|6060
4D5N|1|X|U|6061
4D5N|1|X|G|6062
4D5N|1|X|A|6063
4D5N|1|X|G|6064
4D5N|1|X|A|6065
4D5N|1|X|G|6066
4D5N|1|X|G|6067
4D5N|1|X|U|6068
4D5N|1|X|U|6069
4D5N|1|X|A|6070
4D5N|1|X|A|6071
4D5N|1|X|U|6072
4D5N|1|X|A|6073
4D5N|1|X|A|6074
4D5N|1|X|A|6075
4D5N|1|X|U|6076

Current chains

Chain X

CRICKET PARALYSIS VIRUS IRES RNA

Nearby chains