HL_4D61_005
3D structure
- PDB id
- 4D61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CAGAUCAAAACCAACCCGUAG
- Length
- 21 nucleotides
- Bulged bases
- 4D61|1|1|G|225, 4D61|1|1|C|228
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4D61|1|1|C|223
4D61|1|1|A|224
4D61|1|1|G|225
4D61|1|1|A|226
4D61|1|1|U|227
4D61|1|1|C|228
4D61|1|1|A|229
4D61|1|1|A|230
4D61|1|1|A|231
4D61|1|1|A|232
4D61|1|1|C|233
4D61|1|1|C|234
4D61|1|1|A|235
4D61|1|1|A|236
4D61|1|1|C|237
4D61|1|1|C|238
4D61|1|1|C|239
4D61|1|1|G|240
4D61|1|1|U|296
4D61|1|1|A|297
4D61|1|1|G|298
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain E
- 40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1
- Chain G
- 40S RIBOSOMAL PROTEIN S6
- Chain I
- 40S RIBOSOMAL PROTEIN S8
- Chain L
- 40S RIBOSOMAL PROTEIN S11
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