HL_4D61_015

3D structure

PDB id

4D61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

4D61|1|1|G|821

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4D61_015 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.349

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

4D61|1|1|U|820
4D61|1|1|G|821
4D61|1|1|U|822
4D61|1|1|U|823
4D61|1|1|C|824
4D61|1|1|A|825
4D61|1|1|A|826
4D61|1|1|A|827
4D61|1|1|G|828

Current chains

Chain 1

18S RRNA

Nearby chains

Chain E

40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1

Chain J

40S RIBOSOMAL PROTEIN S9

Chain Y

40S RIBOSOMAL PROTEIN S24