HL_4D61_017
3D structure
- PDB id
- 4D61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CUAUUUUGUUGGUUUUCGG
- Length
- 19 nucleotides
- Bulged bases
- 4D61|1|1|A|886
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4D61_017 not in the Motif Atlas
- Homologous match to HL_8P9A_208
- Geometric discrepancy: 0.5337
- The information below is about HL_8P9A_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4D61|1|1|C|884
4D61|1|1|U|885
4D61|1|1|A|886
4D61|1|1|U|887
4D61|1|1|U|888
4D61|1|1|U|889
4D61|1|1|U|890
4D61|1|1|G|891
4D61|1|1|U|892
4D61|1|1|U|893
4D61|1|1|G|894
4D61|1|1|G|895
4D61|1|1|U|896
4D61|1|1|U|897
4D61|1|1|U|898
4D61|1|1|U|899
4D61|1|1|C|900
4D61|1|1|G|901
4D61|1|1|G|902
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain G
- 40S RIBOSOMAL PROTEIN S6
- Chain I
- 40S RIBOSOMAL PROTEIN S8
- Chain L
- 40S RIBOSOMAL PROTEIN S11
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