HL_4D61_032
3D structure
- PDB id
- 4D61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GUCAUAAGC
- Length
- 9 nucleotides
- Bulged bases
- 4D61|1|1|G|1665
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4D61_032 not in the Motif Atlas
- Homologous match to HL_4V88_220
- Geometric discrepancy: 0.3242
- The information below is about HL_4V88_220
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01927.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4D61|1|1|G|1658
4D61|1|1|U|1659
4D61|1|1|C|1660
4D61|1|1|A|1661
4D61|1|1|U|1662
4D61|1|1|A|1663
4D61|1|1|A|1664
4D61|1|1|G|1665
4D61|1|1|C|1666
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain Q
- 40S RIBOSOMAL PROTEIN S16
- Chain S
- 40S RIBOSOMAL PROTEIN S18
- Chain T
- 40S RIBOSOMAL PROTEIN S19
- Chain U
- 40S RIBOSOMAL PROTEIN S20
- Chain d
- 40S RIBOSOMAL PROTEIN S29
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