HL_4D61_035

3D structure

PDB id

4D61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

AAUACAAUUUUGAGAGGUUAAUAAAU

Length

26 nucleotides

Bulged bases

4D61|1|j|U|6068

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D61|1|j|A|6051
4D61|1|j|A|6052
4D61|1|j|U|6053
4D61|1|j|A|6054
4D61|1|j|C|6055
4D61|1|j|A|6056
4D61|1|j|A|6057
4D61|1|j|U|6058
4D61|1|j|U|6059
4D61|1|j|U|6060
4D61|1|j|U|6061
4D61|1|j|G|6062
4D61|1|j|A|6063
4D61|1|j|G|6064
4D61|1|j|A|6065
4D61|1|j|G|6066
4D61|1|j|G|6067
4D61|1|j|U|6068
4D61|1|j|U|6069
4D61|1|j|A|6070
4D61|1|j|A|6071
4D61|1|j|U|6072
4D61|1|j|A|6073
4D61|1|j|A|6074
4D61|1|j|A|6075
4D61|1|j|U|6076

Current chains

Chain j

CRICKET PARALYSIS VIRUS IRES RNA

Nearby chains