HL_4DKZ_002

3D structure

PDB id

4DKZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hairpin structure of a DNA dodecamer containing North-methanocarba-2'-deoxythymidine

Experimental method

X-RAY DIFFRACTION

Resolution

1.8 Å

Loop

Sequence

GAA(0KZ)(0KZ)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 0KZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4DKZ|1|B|DG|204
4DKZ|1|B|DA|205
4DKZ|1|B|DA|206
4DKZ|1|B|0KZ|207
4DKZ|1|B|0KZ|208
4DKZ|1|B|DC|209

Current chains

Chain B

Synthetic DNA dodecamer containg North-methanocarba-2'-deoxythymidine (N-MCdT)

Nearby chains