HL_4DR1_008

3D structure

PDB id

4DR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the apo 30S ribosomal subunit from Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4DR1_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.063

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4DR1|1|A|C|320
4DR1|1|A|A|321
4DR1|1|A|C|322
4DR1|1|A|U|323
4DR1|1|A|G|324
4DR1|1|A|A|325
4DR1|1|A|G|326
4DR1|1|A|A|327
4DR1|1|A|C|328
4DR1|1|A|A|329
4DR1|1|A|C|330
4DR1|1|A|G|331
4DR1|1|A|G|332
4DR1|1|A|G|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20