HL_4DR2_012

3D structure

PDB id

4DR2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with multiple copies of paromomycin molecules bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CGACGAG

Length

7 nucleotides

Bulged bases

4DR2|1|A|C|461

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4DR2_012 not in the Motif Atlas

Homologous match to HL_4LFB_012

Geometric discrepancy: 0.103

The information below is about HL_4LFB_012

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4DR2|1|A|C|458
4DR2|1|A|G|459
4DR2|1|A|A|460
4DR2|1|A|C|461
4DR2|1|A|G|462
4DR2|1|A|A|463
4DR2|1|A|G|474

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16