HL_4DR2_023

3D structure

PDB id

4DR2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with multiple copies of paromomycin molecules bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CCGCGAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4DR2_023 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.259

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4DR2|1|A|C|1029
4DR2|1|A|C|1030
4DR2|1|A|G|1030|||A
4DR2|1|A|C|1030|||B
4DR2|1|A|G|1030|||C
4DR2|1|A|A|1030|||D
4DR2|1|A|G|1031
4DR2|1|A|G|1032

Current chains

Chain A

16S rRNA

Nearby chains