HL_4DR4_008

3D structure

PDB id

4DR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4DR4_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0718

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4DR4|1|A|C|320
4DR4|1|A|A|321
4DR4|1|A|C|322
4DR4|1|A|U|323
4DR4|1|A|G|324
4DR4|1|A|A|325
4DR4|1|A|G|326
4DR4|1|A|A|327
4DR4|1|A|C|328
4DR4|1|A|A|329
4DR4|1|A|C|330
4DR4|1|A|G|331
4DR4|1|A|G|332
4DR4|1|A|G|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20