3D structure

PDB id
4DR4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules bound
Experimental method
X-RAY DIFFRACTION
Resolution
3.97 Å

Loop

Sequence
CGG(MA6)(MA6)G
Length
6 nucleotides
Bulged bases
4DR4|1|A|G|1517
QA status
Modified nucleotides: MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4DR4_032 not in the Motif Atlas
Homologous match to HL_4LFB_032
Geometric discrepancy: 0.2189
The information below is about HL_4LFB_032
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

4DR4|1|A|C|1515
4DR4|1|A|G|1516
4DR4|1|A|G|1517
4DR4|1|A|MA6|1518
4DR4|1|A|MA6|1519
4DR4|1|A|G|1520

Current chains

Chain A
16S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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