HL_4DR4_032

3D structure

PDB id

4DR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

CGG(MA6)(MA6)G

Length

6 nucleotides

Bulged bases

4DR4|1|A|G|1517

QA status

Modified nucleotides: MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4DR4_032 not in the Motif Atlas

Homologous match to HL_4LFB_032

Geometric discrepancy: 0.2189

The information below is about HL_4LFB_032

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4DR4|1|A|C|1515
4DR4|1|A|G|1516
4DR4|1|A|G|1517
4DR4|1|A|MA6|1518
4DR4|1|A|MA6|1519
4DR4|1|A|G|1520

Current chains

Chain A

16S rRNA

Nearby chains