HL_4DR6_005

3D structure

PDB id

4DR6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position and streptomycin bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCUUUGC

Length

7 nucleotides

Bulged bases

4DR6|1|A|U|202

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4DR6_005 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3398

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4DR6|1|A|G|200
4DR6|1|A|C|201
4DR6|1|A|U|202
4DR6|1|A|U|203
4DR6|1|A|U|204
4DR6|1|A|G|216
4DR6|1|A|C|217

Current chains

Chain A

16S rRNA

Nearby chains