3D structure

PDB id
4DR6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position and streptomycin bound
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CUGCAACCCG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4DR6_029 not in the Motif Atlas
Homologous match to HL_4LFB_029
Geometric discrepancy: 0.0744
The information below is about HL_4LFB_029
Detailed Annotation
T-loop with 3 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_02887.3
Basepair signature
cWW-tWH-F-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

4DR6|1|A|C|1314
4DR6|1|A|U|1315
4DR6|1|A|G|1316
4DR6|1|A|C|1317
4DR6|1|A|A|1318
4DR6|1|A|A|1319
4DR6|1|A|C|1320
4DR6|1|A|C|1321
4DR6|1|A|C|1322
4DR6|1|A|G|1323

Current chains

Chain A
16S rRNA

Nearby chains

Chain M
30S ribosomal protein S13
Chain N
30S ribosomal protein S14
Chain S
30S ribosomal protein S19

Coloring options:


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