3D structure

PDB id
4DR7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound
Experimental method
X-RAY DIFFRACTION
Resolution
3.75 Å

Loop

Sequence
CUACGG
Length
6 nucleotides
Bulged bases
4DR7|1|A|A|344
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4DR7_009 not in the Motif Atlas
Homologous match to HL_4LFB_009
Geometric discrepancy: 0.1671
The information below is about HL_4LFB_009
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_34617.5
Basepair signature
cWW-tSW-F
Number of instances in this motif group
57

Unit IDs

4DR7|1|A|C|342
4DR7|1|A|U|343
4DR7|1|A|A|344
4DR7|1|A|C|345
4DR7|1|A|G|346
4DR7|1|A|G|347

Current chains

Chain A
16S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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