HL_4DR7_031

3D structure

PDB id

4DR7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

4DR7|1|A|A|1451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4DR7_031 not in the Motif Atlas

Homologous match to HL_4LFB_031

Geometric discrepancy: 0.1035

The information below is about HL_4LFB_031

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4DR7|1|A|C|1449
4DR7|1|A|U|1450
4DR7|1|A|A|1451
4DR7|1|A|C|1452
4DR7|1|A|G|1453
4DR7|1|A|G|1454

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20