HL_4DS6_005

3D structure

PDB id

4DS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a group II intron in the pre-catalytic state

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

UGCAUAACAA

Length

10 nucleotides

Bulged bases

4DS6|1|A|G|179, 4DS6|1|A|C|180

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4DS6_005 not in the Motif Atlas

Homologous match to HL_5J02_005

Geometric discrepancy: 0.1324

The information below is about HL_5J02_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4DS6|1|A|U|178
4DS6|1|A|G|179
4DS6|1|A|C|180
4DS6|1|A|A|181
4DS6|1|A|U|182
4DS6|1|A|A|183
4DS6|1|A|A|184
4DS6|1|A|C|185
4DS6|1|A|A|186
4DS6|1|A|A|187

Current chains

Chain A

Mutant Group IIC Intron

Nearby chains