HL_4DS6_006

3D structure

PDB id

4DS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a group II intron in the pre-catalytic state

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4DS6_006 not in the Motif Atlas

Geometric match to HL_5Y7M_002

Geometric discrepancy: 0.0887

The information below is about HL_5Y7M_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

4DS6|1|A|G|274
4DS6|1|A|G|275
4DS6|1|A|A|276
4DS6|1|A|A|277
4DS6|1|A|A|278
4DS6|1|A|C|279

Current chains

Chain A

Mutant Group IIC Intron

Nearby chains