3D structure

PDB id
4DUY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C
Experimental method
X-RAY DIFFRACTION
Resolution
3.39 Å

Loop

Sequence
GGAAAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4DUY_003 not in the Motif Atlas
Homologous match to HL_4LFB_003
Geometric discrepancy: 0.0752
The information below is about HL_4LFB_003
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

4DUY|1|A|G|158
4DUY|1|A|G|159
4DUY|1|A|A|160
4DUY|1|A|A|161
4DUY|1|A|A|162
4DUY|1|A|C|163

Current chains

Chain A
16S rRNA

Nearby chains

Chain T
ribosomal protein S20

Coloring options:


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