HL_4DUY_008

3D structure

PDB id

4DUY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4DUY_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.062

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4DUY|1|A|C|320
4DUY|1|A|A|321
4DUY|1|A|C|322
4DUY|1|A|U|323
4DUY|1|A|G|324
4DUY|1|A|A|325
4DUY|1|A|G|326
4DUY|1|A|A|327
4DUY|1|A|C|328
4DUY|1|A|A|329
4DUY|1|A|C|330
4DUY|1|A|G|331
4DUY|1|A|G|332
4DUY|1|A|G|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

ribosomal protein S16

Chain T

ribosomal protein S20