HL_4DUY_013

3D structure

PDB id

4DUY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

GCAGCC(7MG)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4DUY_013 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.2408

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4DUY|1|A|G|521
4DUY|1|A|C|522
4DUY|1|A|A|523
4DUY|1|A|G|524
4DUY|1|A|C|525
4DUY|1|A|C|526
4DUY|1|A|7MG|527
4DUY|1|A|C|528

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

ribosomal protein S12