HL_4DUY_029

3D structure

PDB id

4DUY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

CUGCAACCCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4DUY_029 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.0713

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4DUY|1|A|C|1314
4DUY|1|A|U|1315
4DUY|1|A|G|1316
4DUY|1|A|C|1317
4DUY|1|A|A|1318
4DUY|1|A|A|1319
4DUY|1|A|C|1320
4DUY|1|A|C|1321
4DUY|1|A|C|1322
4DUY|1|A|G|1323

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

ribosomal protein S13

Chain N

ribosomal protein S14

Chain S

ribosomal protein S19