3D structure

PDB id
4DUY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C
Experimental method
X-RAY DIFFRACTION
Resolution
3.39 Å

Loop

Sequence
CUGCAACCCG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4DUY_029 not in the Motif Atlas
Homologous match to HL_4LFB_029
Geometric discrepancy: 0.0713
The information below is about HL_4LFB_029
Detailed Annotation
T-loop with 3 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_02887.3
Basepair signature
cWW-tWH-F-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

4DUY|1|A|C|1314
4DUY|1|A|U|1315
4DUY|1|A|G|1316
4DUY|1|A|C|1317
4DUY|1|A|A|1318
4DUY|1|A|A|1319
4DUY|1|A|C|1320
4DUY|1|A|C|1321
4DUY|1|A|C|1322
4DUY|1|A|G|1323

Current chains

Chain A
16S rRNA

Nearby chains

Chain M
ribosomal protein S13
Chain N
ribosomal protein S14
Chain S
ribosomal protein S19

Coloring options:


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