HL_4DUZ_023

3D structure

PDB id

4DUZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CCGCGAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4DUZ_023 not in the Motif Atlas

Geometric match to HL_4WF9_053

Geometric discrepancy: 0.35

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4DUZ|1|A|C|1029
4DUZ|1|A|C|1030
4DUZ|1|A|G|1030|||A
4DUZ|1|A|C|1030|||B
4DUZ|1|A|G|1030|||C
4DUZ|1|A|A|1030|||D
4DUZ|1|A|G|1031
4DUZ|1|A|G|1032

Current chains

Chain A

16S rRNA

Nearby chains